PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017471-PA
Common NameOsI_21175
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 448aa    MW: 47489 Da    PI: 4.695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017471-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-13212263155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e+I++L+
  BGIOSGA017471-PA 212 QRMTHIAVERNRRRQMNEYLRVLRSLMPGS---YVQRGDQASIIGGAIEFIRELE 263
                       79****************************...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-13210266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-14210267No hitNo description
PROSITE profilePS5088815.897211262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-17211280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10212263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9217268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00139374432No hitNo description
PROSITE profilePS5167110.103374448IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MASFTCPTSK SSEEKASDDA TTEQNANNNI AVQQRSHLER FAALDEAPPP APEATVVTGG  60
EMVDYMLGQP PPTTPGPQSQ VSFDKLTFSD VLQFADFGPK LALNQPAASD NGGGGGDDGD  120
DDDDSYFLRF QSLPSLPAVP PPRGGAGAAH QVVDEQEGSK QTVDAGGVSE STTLVQQADG  180
GGGRAEKAGE QGKSGRRKRP RTVKTSEEVE SQRMTHIAVE RNRRRQMNEY LRVLRSLMPG  240
SYVQRGDQAS IIGGAIEFIR ELEQLIQCLE SQKRRRLYGG DAPAPPARPV ADGAVLPAPM  300
QQPPPATPPF FPPSIPFPAS SGAGDGTGAG VAKVALDLDA SGGGEVGGGV REEMAENKSC  360
VADIEVRVVG VDAMIKILSR RRPGQLIKTV AALEEMHMSI LHTNITTIDQ TVLYSFNVKI  420
AGDARFSAED IAGAVHQILS FIDVNYTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212223RMTHIAVERNRR
2272276KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.466001e-31panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329688271e-31
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638786.10.0PREDICTED: transcription factor FAMA-like
SwissprotQ56YJ81e-110FAMA_ARATH; Transcription factor FAMA
TrEMBLA2Y8070.0A2Y807_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA017471-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95023340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-55bHLH family protein